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SRX002000: Plasmodium falciparum 3D7 Exploration
1 LS454 (454 GS FLX) run: 186,260 spots, 61.9M bases, 122.5Mb downloads

UUID: 8ee2def3-44e8-46a1-b712-9993a69863eb
Design: Plasmodium falciparum 3D7 Exploration 3x on 454 FLX
Submitted by: Broad Institute (BI)
Study: Plasmodium falciparum genome sequencing project -Primary submission
show Abstracthide Abstract
The <i>Plasmodium falciparum</i> genome has a total size of 23 Mb, organized in 14 chromosomes. Due to its size and the high AT content, a chromosome-based approach was chosen for the sequencing strategy. The chromosomes from <i>P. falciparum</i> 3D7 were distributed among the sequencing centers that make up the <a href="http://www.sanger.ac.uk/Projects/P_falciparum/who&what.shtml"><i>P. falciparum</i> Genome Sequencing Consortium</a>, established in 1996. The sequencing centers involved in this research program are <a href="http://www.sanger.ac.uk/Projects/P_falciparum/">The Sanger Institute</a>, The Institute for Genomic Research (<a href="http://www.tigr.org/tdb/e2k1/pfa1/">TIGR</a>) in collaboration with the <a href="http://www.nmrc.navy.mil/">US Naval Medical Research Center</a>, and the <a href="http://med.stanford.edu/sgtc/research/malaria.html">Stanford Genome Technology Center</a> at Stanford University.
Sample: Generic sample from Plasmodium falciparum 3D7
SAMN00102897 • SRS001883 • All experiments • All runs
Library:
Name: 454-1162
Instrument: 454 GS FLX
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
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Experiment attributes: (show all 5 attributes...) (hide...)
gssr_id: 11854.7
lsid: BROAD:SEQUENCING_SAMPLE:11854.7
material_type: Genomic DNA
project: G1458
work_request: 16764
Pipeline: show...hide...
NameStepProgramVersion
base caller2008-07-09 22:10:03.0454BaseCaller1.1.03.24
Runs: 1 run, 186,260 spots, 61.9M bases, 122.5Mb
Run# of Spots# of BasesSizePublished
SRR006915186,26061.9M122.5Mb2008-12-22

ID:
2073

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